Linux · Office & Productivity
Alexandria
Personal library of scientific PDFs
by Paul Emsley
Official site: flathub.org
About Alexandria
Alexandria is a application for managing a local store of scientific papers.
Typically starting with a directory of PDFs, it extracts metadata (title,
authors, year, DOI, journal) from the text of the PDF, consults CrossRef and
OpenAlex, then presents a searchable, filterable card browser.
Alexandria tries to make it easy to find and add related papers.
Full-text search across title, authors, abstract, DOI and journal
Citation counts and per-year sparklines from OpenAlex
Built-in PDF viewer with highlight and comment annotations,
and click-through citation links that jump to the reference
A viewer sidebar with the paper's table of contents, page
thumbnails and your highlights
Structured full text (JATS XML) fetched from Europe PMC and
stored beside the PDF
Authors window: a persistent trail of the authors you follow,
with their works, collaborators, funding and affiliation history
Journal and topic subscriptions, flagging new papers by
authors you have looked up before
BibTeX, RIS and CSL export; BibTeX and DOI import
Preprint detection (arXiv, bioRxiv, chemRxiv and more)
Duplicate detection by DOI and file hash, with supporting
How to install Alexandria
- Click Download — the developer's official website opens in a new tab.
- Download the latest version there and run it. Choose Custom/Advanced where offered, and skip any bundled extras.
- Prefer the command line? With Flatpak you can install and update it with: flatpak install flathub io.github.pemsley.Alexandria
- Open Alexandria once it finishes installing.
Frequently asked questions
Is Alexandria free to download?
Yes. The Download button sends you to flathub.org, the developer's official site, where Alexandria is available to download. Flatnic doesn't host or modify any files.
How do I install Alexandria from the command line?
With Flatpak, run: flatpak install flathub io.github.pemsley.Alexandria. This installs it from the official source and keeps it updated.
Is Alexandria safe?
Alexandria downloads directly from the developer. As always, scan the installer with your antivirus and choose Custom setup to skip any bundled extras.